STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2749COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2699 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor. (816 aa)    
Predicted Functional Partners:
Lbys_3033
KEGG: dfe:Dfer_0219 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.638
Lbys_3214
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.599
Lbys_1195
TonB family protein; InterPro IPR008756:IPR006260; KEGG: sli:Slin_6187 TonB family protein; PFAM: peptidase M56 BlaR1; TonB domain; SPTR: Putative uncharacterized protein; TIGRFAM: TonB family protein; PFAM: BlaR1 peptidase M56; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
   0.564
Lbys_2495
InterPro IPR005632; KEGG: dfe:Dfer_3973 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like); Uncharacterised protein family UPF0565.
  
     0.551
Lbys_2748
Fatty acid hydroxylase; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: fjo:Fjoh_2362 sterol desaturase-like protein; PFAM: fatty acid hydroxylase; SPTR: Sterol desaturase-like protein; PFAM: Fatty acid hydroxylase superfamily.
       0.526
Lbys_3166
InterPro IPR005067; KEGG: dfe:Dfer_5690 acyl-(acyl-carrier-protein) desaturase; PFAM: fatty acid desaturase type 2; PRIAM: Acyl-[acyl-carrier-protein] desaturase; SPTR: Acyl-(Acyl-carrier-protein) desaturase; PFAM: Fatty acid desaturase.
  
     0.465
Lbys_1441
KEGG: dfe:Dfer_5204 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.455
Lbys_0698
Outer membrane assembly lipoprotein YfiO; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: dfe:Dfer_5214 outer membrane assembly lipoprotein YfiO; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO.
  
     0.439
Lbys_0046
KEGG: dfe:Dfer_3101 conserved hypothetical protein, membrane; SPTR: Putative uncharacterized protein; PFAM: Bacterial membrane protein YfhO.
  
     0.426
Lbys_3458
KEGG: sli:Slin_0400 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.424
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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