STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2755COGs: COG2836 conserved hypothetical protein; KEGG: fjo:Fjoh_2541 hypothetical protein; SPTR: Putative uncharacterized protein. (220 aa)    
Predicted Functional Partners:
Lbys_2757
Cytochrome c oxidase accessory protein CcoG; COGs: COG0348 Polyferredoxin; InterPro IPR017900:IPR017896:IPR014116; KEGG: chu:CHU_1141 ferredoxin; SPTR: Cytochrome c oxidase accessory protein CcoG; TIGRFAM: cytochrome c oxidase accessory protein CcoG; PFAM: Ubp3 associated protein Bre5; TIGRFAM: cytochrome c oxidase accessory protein FixG.
 
   
 0.956
Lbys_2758
Cytochrome c class I; InterPro IPR009056:IPR003088; KEGG: dfe:Dfer_5322 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome-c oxidase FixP chain; PFAM: Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III.
 
     0.953
Lbys_2760
COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883:IPR009056:IPR003468:IPR004677; KEGG: phe:Phep_2484 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; SPTR: Cytochrome c oxidase, Cbb3-type, subunit I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxid [...]
 
   
 0.952
Lbys_2756
KEGG: cpi:Cpin_0685 FixH family protein; SPTR: FixH family protein; PFAM: FixH.
 
     0.934
Lbys_2752
E1-E2 ATPase-associated domain protein; COGs: COG2217 Cation transport ATPase; InterProIPR020834:IPR018303:IPR001757:IPR001756:IPR 006121:IPR008250:IPR005834; KEGG: fps:FP1153 cytochrome cbb3 oxidase maturation protein CcoI; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: E1-E2 ATPase subfamily, putative; PFAM: E1-E2 ATPase; Putative metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC.
 
   
 0.796
Lbys_0331
Cytochrome-c oxidase; COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883; KEGG: cpi:Cpin_5783 cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I; PRIAM: Cytochrome-c oxidase; SPTR: Cytochrome-c oxidase; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I.
 
   
 0.772
Lbys_2759
KEGG: dfe:Dfer_5322 cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Cbb3-type cytochrome oxidase component FixQ.
       0.752
Lbys_1320
COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR007197:IPR010723:IPR006638:IPR004558; KEGG: sli:Slin_3571 oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
   
 0.708
Lbys_0332
COGs: COG2993 Cbb3-type cytochrome oxidase cytochrome c subunit; InterPro IPR009056:IPR003468:IPR003088; KEGG: dfe:Dfer_1787 cytochrome c oxidase mono-heme subunit/FixO; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I; SPTR: Cytochrome C oxidase mono-heme subunit/FixO; PFAM: Cytochrome c; Cytochrome C oxidase, mono-heme subunit/FixO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II.
 
     0.632
Lbys_2751
InterPro IPR004714; KEGG: phe:Phep_2483 cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; SPTR: Cytochrome oxidase maturation protein, Cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type.
 
     0.557
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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