Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lbys_2803TonB-dependent receptor plug; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4175 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain. (1100 aa)    
Predicted Functional Partners:
Lbys_2804
KEGG: sli:Slin_3039 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.945
Lbys_0833
Beta-glycosidase; KEGG: bvu:BVU_0843 beta-glycosidase; SPTR: Putative uncharacterized protein.
  
     0.594
Lbys_1869
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_2453 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
  
 
   0.544
Lbys_2780
RagB/SusD domain protein; InterPro IPR012944; KEGG: zpr:ZPR_4223 putative outer membrane protein probably involved in nutrient binding; PFAM: RagB/SusD domain protein; SPTR: Putative outer membrane protein probably involved in nutrient binding; PFAM: SusD family.
  
 
   0.510
Lbys_3372
YdjC family protein; COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: dfe:Dfer_4311 YdjC family protein; PFAM: YdjC family protein; SPTR: YdjC family protein; PFAM: YdjC-like protein.
  
     0.505
Lbys_0121
KEGG: fjo:Fjoh_0088 hypothetical protein; SPTR: Probable transposase; PFAM: Transposase IS200 like.
  
     0.479
Lbys_3356
KEGG: dfe:Dfer_2722 hypothetical protein; SPTR: Putative uncharacterized protein.
     0.468
Lbys_3377
KEGG: dfe:Dfer_3219 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.459
Lbys_2805
ROK family protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_3041 ROK family protein; PFAM: ROK family protein; SPTR: ROK family protein; PFAM: ROK family.
       0.453
Lbys_2806
COGs: COG3538 conserved hypothetical protein; InterPro IPR008313; KEGG: sli:Slin_4029 hypothetical protein; PFAM: Uncharacterised conserved protein UCP028846; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1237).
       0.453
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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