Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_2829KEGG: dfe:Dfer_4871 hypothetical protein; SPTR: Putative uncharacterized protein. (341 aa)    
Predicted Functional Partners:
ilvA
L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
       0.544
Lbys_3561
KEGG: sli:Slin_4634 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.525
Lbys_0931
KEGG: sli:Slin_2039 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 0.514
Lbys_3560
KEGG: sli:Slin_4635 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.490
Lbys_2489
InterPro IPR010496; KEGG: dfe:Dfer_3235 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; PFAM: PA14 domain; Domain of Unknown Function (DUF1080).
  
     0.454
Lbys_2344
alpha-L-rhamnosidase; InterPro IPR013737:IPR008902; KEGG: cpi:Cpin_6026 alpha-L-rhamnosidase; PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; SPTR: Alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; Belongs to the glycosyl hydrolase 2 family.
  
     0.450
Lbys_1453
KEGG: sli:Slin_0343 hypothetical protein; SPTR: Lipoprotein, putative; PFAM: DinB family.
  
     0.439
Lbys_0929
KEGG: sli:Slin_1995 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.428
Lbys_0373
Sugar transport family protein; InterPro IPR010651; KEGG: pdi:BDI_1654 putative integral membrane protein; PFAM: sugar transport family protein; SPTR: Integral membrane protein; PFAM: Fatty acid elongase 3-ketoacyl-CoA synthase 1.
  
     0.423
Lbys_2101
KEGG: dfe:Dfer_4404 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: MG2 domain.
  
    0.422
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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