STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2897Redoxin domain protein; InterPro IPR013740:IPR017936; KEGG: dfe:Dfer_3524 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin domain protein; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: Redoxin. (387 aa)    
Predicted Functional Partners:
Lbys_2898
KEGG: dfe:Dfer_3784 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Lbys_2901
COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006674:IPR006261:IPR003607; KEGG: chu:CHU_2101 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; PRIAM: dGTPase; SMART: metal-dependent phosphohydrolase HD region; SPTR: Deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative.
       0.553
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
       0.547
Lbys_2900
InterPro IPR015414; KEGG: dfe:Dfer_3984 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein.
       0.547
Lbys_0934
COGs: COG1225 Peroxiredoxin; InterPro IPR017936:IPR017937:IPR019825:IPR000866; KEGG: fjo:Fjoh_3991 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thiol:disulfide interchange protein; PFAM: AhpC/TSA family.
  
     0.420
Lbys_0809
COGs: COG1225 Peroxiredoxin; InterPro IPR017936:IPR017937:IPR000866; KEGG: phe:Phep_0264 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: AhpC/TSA family.
  
     0.416
Lbys_2097
TonB-dependent receptor; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1227 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
     0.414
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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