STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2906Thioesterase superfamily protein; COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: cli:Clim_0505 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Putative uncharacterized protein; PFAM: Acyl-ACP thioesterase; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family. (131 aa)    
Predicted Functional Partners:
Lbys_2827
COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108:IPR001753; KEGG: sli:Slin_4424 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; Enoyl-CoA hydratase/isomerase; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
  
 
 0.675
Lbys_2907
KEGG: sli:Slin_5353 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.594
rpmG
LSU ribosomal protein L33P; InterPro IPR001705; KEGG: phe:Phep_3522 ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family.
       0.539
Lbys_2499
COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR004410:IPR014043; KEGG: chu:CHU_2469 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase; SPTR: [Acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase.
  
 
 0.526
Lbys_0448
KEGG: dfe:Dfer_4469 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.512
Lbys_2206
Thrombospondin type 3 repeat-containing protein; InterPro IPR018247:IPR003367:IPR006665; KEGG: fjo:Fjoh_0697 OmpA/MotB domain-containing protein; PFAM: Thrombospondin type 3 repeat-containing protein; SPTR: Thrombospondin type 3 repeat:OmpA/MotB; PFAM: OmpA family; Thrombospondin type 3 repeat.
 
     0.459
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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