STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3012RagB/SusD domain protein; InterPro IPR012944:IPR002173; KEGG: dfe:Dfer_1459 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family. (593 aa)    
Predicted Functional Partners:
Lbys_3011
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1460 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
     0.930
Lbys_2779
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_4224 TonB-dependent receptor Plug domain protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
     0.767
Lbys_0108
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1438 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
 
   0.756
Lbys_3013
Hypothetical protein; InterPro IPR009056; KEGG: sli:Slin_3038 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.737
Lbys_2312
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_5058 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
  
     0.728
Lbys_0004
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: pru:PRU_2610 outer membrane receptor (OMR) family transporter; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
 
   0.710
Lbys_2313
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_5059 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
     0.689
Lbys_0354
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: fjo:Fjoh_2077 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
 
   0.682
Lbys_2947
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: fjo:Fjoh_0782 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
     0.675
Lbys_2271
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_2898 putative outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
     0.673
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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