STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3022Oxidoreductase, putative; COGs: COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor; KEGG: sli:Slin_6617 oxidoreductase, putative; SPTR: Oxidoreductase, putative; PFAM: BNR/Asp-box repeat. (331 aa)    
Predicted Functional Partners:
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
  
    0.598
Lbys_3023
KEGG: dfe:Dfer_4063 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.551
Lbys_3142
KEGG: dfe:Dfer_2778 glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1.
  
     0.430
Lbys_2175
KEGG: chu:CHU_3070 hypothetical protein; SPTR: GTP-binding protein EngA; PFAM: SprT-like family.
  
     0.429
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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