STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3069Peptidase S41; COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151; KEGG: dfe:Dfer_1696 peptidase S41; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Peptidase S41; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF). (450 aa)    
Predicted Functional Partners:
Lbys_3070
KEGG: pgn:PGN_0794 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2891).
       0.773
Lbys_3071
Outer membrane chaperone Skp (OmpH); InterPro IPR005632; KEGG: tet:TTHERM_00268040 Viral A-type inclusion protein repeat containing protein; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like).
       0.636
Lbys_3068
KEGG: dfe:Dfer_2695 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.548
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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