Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_3133Integrase catalytic region; COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: bcb:BCB4264_A4383 integrase core domain protein; PFAM: Integrase catalytic region; SPTR: Transposase; PFAM: Integrase core domain. (259 aa)    
Predicted Functional Partners:
Lbys_3132
Transposase IS3/IS911 family protein; InterPro IPR002514; KEGG: hin:HI1720 hypothetical protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase.
 
    0.918
Lbys_0741
Transposase IS3/IS911 family protein; InterPro IPR002514; KEGG: hin:HI1720 hypothetical protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase.
 
    0.784
Lbys_1963
Transposase IS3/IS911 family protein; InterPro IPR002514; KEGG: hin:HI1720 hypothetical protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase.
 
    0.784
Lbys_3131
Protein of unknown function DUF306 Meta and HslJ; COGs: COG3187 Heat shock protein; InterPro IPR005184; KEGG: cph:Cpha266_1928 protein of unknown function DUF306, MetA and HslJ; PFAM: protein of unknown function DUF306 Meta and HslJ; SPTR: Putative uncharacterized protein; PFAM: META domain.
       0.492
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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