STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3142KEGG: dfe:Dfer_2778 glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1. (331 aa)    
Predicted Functional Partners:
Lbys_3141
COGs: COG0438 Glycosyltransferase; KEGG: bth:BT_0471 glycosyltransferase; SPTR: Glycoside transferase family 4; PFAM: Glycosyl transferases group 1.
       0.773
Lbys_0442
Glycosyl transferase family 39; COGs: COG5305 membrane protein; InterPro IPR003342; KEGG: sli:Slin_2543 membrane protein-like protein; PFAM: glycosyl transferase family 39; SPTR: Membrane protein-like protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.736
Lbys_1706
InterPro IPR005181; KEGG: sli:Slin_5096 hypothetical protein; PFAM: protein of unknown function DUF303 acetylesterase; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF303).
  
     0.717
Lbys_0054
KEGG: sli:Slin_2569 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.651
Lbys_3143
Fmu (Sun) domain protein; COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: sli:Slin_5890 Fmu (Sun) domain protein; PFAM: Fmu (Sun) domain protein; SPTR: Fmu (Sun) domain protein; PFAM: NOL1/NOP2/sun family.
       0.584
Lbys_3144
MscS Mechanosensitive ion channel; InterPro IPR006685; KEGG: zpr:ZPR_2321 small-conductance mechanosensitive ion channel protein; PFAM: MscS Mechanosensitive ion channel; SPTR: Small-conductance mechanosensitive ion channel protein; PFAM: Mechanosensitive ion channel.
       0.584
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.583
Lbys_3372
YdjC family protein; COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: dfe:Dfer_4311 YdjC family protein; PFAM: YdjC family protein; SPTR: YdjC family protein; PFAM: YdjC-like protein.
  
     0.497
Lbys_3145
COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055:IPR013520; KEGG: bfs:BF1141 putative exonuclease; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; PFAM: Exonuclease.
   
   0.478
Lbys_3146
KEGG: snc:HMPREF0837_11329 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.469
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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