STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
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[Homology]
Score
Lbys_3151Sucraseferredoxin family protein; COGs: COG3411 Ferredoxin; InterPro IPR009737; KEGG: sli:Slin_4000 ferredoxin-like protein; PFAM: Sucraseferredoxin family protein; SPTR: Ferredoxin-like protein; PFAM: Sucrase/ferredoxin-like. (101 aa)    
Predicted Functional Partners:
Lbys_3224
COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: dfe:Dfer_4084 NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit.
 
 
 0.879
Lbys_1542
Glutamate synthase (NADH) small subunit; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR006005:IPR000759; KEGG: dfe:Dfer_5478 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Glutamate synthase, NADH/NADPH, small subunit; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit.
   
 
 0.829
Lbys_3150
HAD superfamily (subfamily IA) hydrolase, TIGR02254; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005833:IPR005834:IPR011951:IPR006439; KEGG: sli:Slin_3999 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD superfamily (subfamily IA) hydrolase, TIGR02254; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; ha [...]
       0.795
Lbys_3153
SNARE associated Golgi protein-like protein; COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: dfe:Dfer_4444 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein.
     
 0.788
Lbys_3152
COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708:IPR006151; KEGG: chu:CHU_0006 shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; SPTR: Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase.
       0.773
Lbys_3154
Phosphosulfolactate synthase; COGs: COG1809 conserved hypothetical protein; InterPro IPR003830; KEGG: phe:Phep_4158 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulfolactate synthase ComA; PRIAM: Phosphosulfolactate synthase; SPTR: Phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulfolactate synthase (ComA).
       0.773
Lbys_2785
Proton-translocating NADH-quinone oxidoreductase, chain M; COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR003918:IPR001750:IPR010227; KEGG: dfe:Dfer_3897 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M.
  
    0.705
Lbys_3392
Proton-translocating NADH-quinone oxidoreductase, chain M; COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR003918:IPR001750:IPR010227; KEGG: sli:Slin_4908 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M.
  
    0.705
Lbys_3226
COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR001041:IPR019574; KEGG: dfe:Dfer_4082 ferredoxin; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; SPTR: Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region.
 
 
 
 0.614
Lbys_3155
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: dfe:Dfer_3223 surface antigen variable number repeat protein; PFAM: surface antigen variable number repeat-containing protein; SPTR: Surface antigen variable number repeat protein; PFAM: Surface antigen variable number repeat.
       0.513
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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