STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3162KEGG: sli:Slin_0659 hypothetical protein; SPTR: Putative uncharacterized protein. (327 aa)    
Predicted Functional Partners:
Lbys_3161
KEGG: sli:Slin_0660 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.883
Lbys_3164
InterPro IPR000644; KEGG: dfe:Dfer_3892 CBS domain containing protein; PFAM: CBS domain containing protein; SPTR: CBS domain containing protein; PFAM: CBS domain.
 
     0.783
Lbys_2023
KEGG: sli:Slin_6385 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.744
Lbys_3231
KEGG: sli:Slin_2396 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.740
Lbys_2955
Putative membrane protein; InterPro IPR019861; KEGG: sli:Slin_5231 hypothetical protein; SPTR: Putative membrane protein; TIGRFAM: putative membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific putative membrane protein.
  
     0.730
Lbys_1571
KEGG: dfe:Dfer_3201 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.722
Lbys_0470
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: sli:Slin_0240 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein, putative; PFAM: Radical SAM superfamily.
  
     0.700
Lbys_0748
Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
  
     0.699
Lbys_0931
KEGG: sli:Slin_2039 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.697
Lbys_0476
KEGG: chu:CHU_3066 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.694
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.