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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3196KEGG: bfs:BF3188 putative lipoprotein; SPTR: Putative uncharacterized protein. (458 aa)    
Predicted Functional Partners:
Lbys_3197
COGs: COG0297 Glycogen synthase; InterPro IPR013534; KEGG: sli:Slin_4463 starch synthase; PFAM: Starch synthase catalytic domain-containing protein; SPTR: Starch synthase; PFAM: Starch synthase catalytic domain.
  
    0.807
Lbys_2711
KEGG: sli:Slin_0229 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.669
Lbys_1582
Endonuclease/exonuclease/phosphatase; InterPro IPR005135; KEGG: dfe:Dfer_0035 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
     0.606
Lbys_3316
Thioredoxin domain-containing protein; InterPro IPR017936:IPR013766; KEGG: sli:Slin_1362 hypothetical protein; PFAM: Thioredoxin domain-containing protein; SPTR: Putative uncharacterized protein; PFAM: Thioredoxin.
  
     0.538
Lbys_2105
KEGG: dfe:Dfer_3011 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490).
  
     0.533
Lbys_0558
KEGG: sli:Slin_2013 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.505
glmS
Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
       0.505
Lbys_1571
KEGG: dfe:Dfer_3201 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.500
Lbys_3483
Hypothetical protein; KEGG: dfe:Dfer_5750 surface antigen (D15); SPTR: Surface antigen (D15).
  
     0.496
Lbys_2391
KEGG: sli:Slin_5550 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.491
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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