STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3206Protein of unknown function DUF1486; InterPro IPR009959; KEGG: hch:HCH_05478 hypothetical protein; PFAM: protein of unknown function DUF1486; SPTR: Putative uncharacterized protein; PFAM: SnoaL-like polyketide cyclase. (153 aa)    
Predicted Functional Partners:
Lbys_3204
KEGG: dfe:Dfer_4391 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.498
Lbys_3205
KEGG: sli:Slin_5879 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.498
Lbys_3336
Fatty acid hydroxylase; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: fjo:Fjoh_3509 sterol desaturase-like protein; PFAM: fatty acid hydroxylase; SPTR: Sterol desaturase-like protein; PFAM: Fatty acid hydroxylase superfamily.
  
     0.435
Lbys_0618
Hypothetical protein; COGs: COG4757 alpha/beta hydrolase; InterPro IPR017208; KEGG: hoh:Hoch_0438 hypothetical protein; SPTR: Alpha/beta hydrolase.
  
     0.402
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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