STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Lbys_3239Transcriptional regulator, AraC family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060:IPR002818:IPR000005; KEGG: phe:Phep_1182 helix-turn-helix-domain containing protein AraC type; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain-containing protein; SMART: Helix-turn-helix, AraC domain; SPTR: Helix-turn-helix-domain containing protein AraC type; PFAM: DJ-1/PfpI family; Bacterial regulatory helix-turn-helix proteins, AraC family. (326 aa)    
Predicted Functional Partners:
Lbys_0199
Transcriptional regulator, AraC family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018062:IPR000005:IPR020449:IPR018060; KEGG: cpi:Cpin_4585 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
     0.606
Lbys_3240
Polyketide cyclase/dehydrase; InterPro IPR019587; KEGG: phe:Phep_2101 hypothetical protein; PFAM: Polyketide cyclase/dehydrase; SPTR: Putative uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport.
       0.542
Lbys_0423
Hypothetical protein; InterPro IPR016944; KEGG: phe:Phep_2123 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.515
Lbys_2318
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR018062:IPR000005; KEGG: zpr:ZPR_3376 putative regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Putative regulatory protein; manually curated; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
   0.513
Lbys_0424
Activator of Hsp90 ATPase 1 family protein; COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: phe:Phep_2122 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase 1 family protein; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein.
  
     0.464
Lbys_2649
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018062:IPR018060:IPR000005; KEGG: dfe:Dfer_3823 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
   0.425
Lbys_3241
Alpha-L-fucosidase; InterPro IPR016518; KEGG: coc:Coch_0071 glycoside hydrolase family protein; PRIAM: Alpha-L-fucosidase; SPTR: Glycoside hydrolase family protein.
       0.409
Lbys_0195
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: cpi:Cpin_5386 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
   0.401
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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