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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3243TonB-dependent receptor plug; InterPro IPR012910; KEGG: pru:PRU_2833 outer membrane receptor (OMR) family transporter; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent receptor. (620 aa)    
Predicted Functional Partners:
Lbys_3244
KEGG: pru:PRU_2832 putative lipoprotein; SPTR: Putative uncharacterized protein.
       0.796
Lbys_3245
KEGG: phe:Phep_2499 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.683
Lbys_3242
COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: dfe:Dfer_3406 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; PFAM: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.675
Lbys_3246
InterPro IPR013538; KEGG: lbf:LBF_1056 hypothetical protein; PFAM: Activator of Hsp90 ATPase 1 family protein; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein.
       0.648
Lbys_0339
Iron-sulfur cluster repair di-iron protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
 
     0.602
Lbys_0330
Transcriptional regulator, BadM/Rrf2 family; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: rbi:RB2501_10797 rrf2 family protein (putative transcriptional regulator); PFAM: protein of unknown function UPF0074; SPTR: Rrf2 family protein (Putative transcriptional regulator); TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator).
  
     0.594
Lbys_3247
KEGG: dfe:Dfer_2475 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.522
Lbys_1086
Thioredoxin; KEGG: cpi:Cpin_6052 thioredoxin; SPTR: Thioredoxin.
  
     0.518
Lbys_0041
KEGG: fjo:Fjoh_2151 hypothetical protein; SPTR: Hypothetical lipoprotein.
  
     0.451
Lbys_0488
InterPro IPR018550; KEGG: gfo:GFO_0335 secreted protein; PFAM: Lipid A 3-O-deacylase-related; SPTR: Putative uncharacterized protein; PFAM: Lipid A 3-O-deacylase (PagL).
  
     0.426
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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