STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3247KEGG: dfe:Dfer_2475 hypothetical protein; SPTR: Putative uncharacterized protein. (609 aa)    
Predicted Functional Partners:
Lbys_2551
Tetratricopeptide repeat protein; InterPro IPR019734:IPR013026; KEGG: sli:Slin_5690 tetratricopeptide repeat protein; SPTR: Tetratricopeptide repeat protein.
  
     0.709
Lbys_3524
KEGG: dfe:Dfer_1218 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.704
Lbys_0896
InterPro IPR019734:IPR013026:IPR001440; KEGG: dfe:Dfer_1030 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein.
  
     0.695
Lbys_0931
KEGG: sli:Slin_2039 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.693
Lbys_2904
KEGG: sli:Slin_5175 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.693
Lbys_3162
KEGG: sli:Slin_0659 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.639
Lbys_2179
Hypothetical protein; InterPro IPR001412; KEGG: sli:Slin_5618 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.604
Lbys_3245
KEGG: phe:Phep_2499 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.600
Lbys_1727
KEGG: sli:Slin_3228 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.599
Lbys_2898
KEGG: dfe:Dfer_3784 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.596
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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