Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lbys_3263KEGG: glo:Glov_1456 hypothetical protein; SPTR: CARDB domain protein. (392 aa)    
Predicted Functional Partners:
Lbys_3316
Thioredoxin domain-containing protein; InterPro IPR017936:IPR013766; KEGG: sli:Slin_1362 hypothetical protein; PFAM: Thioredoxin domain-containing protein; SPTR: Putative uncharacterized protein; PFAM: Thioredoxin.
  
     0.693
Lbys_2954
Hypothetical protein; KEGG: dfe:Dfer_3689 PKD domain containing protein; SPTR: PKD domain containing protein.
  
 
   0.607
Lbys_1159
InterPro IPR002035; KEGG: sus:Acid_2953 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: von Willebrand factor, type A; PFAM: von Willebrand factor type A domain.
  
     0.564
Lbys_3264
Protein of unknown function DUF159; COGs: COG2135 conserved hypothetical protein; InterPro IPR003738; KEGG: rbi:RB2501_03080 hypothetical protein; PFAM: protein of unknown function DUF159; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised ACR, COG2135; Belongs to the SOS response-associated peptidase family.
       0.502
Lbys_3317
Hypothetical protein; InterPro IPR017936; KEGG: sli:Slin_1362 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255.
  
     0.494
Lbys_3483
Hypothetical protein; KEGG: dfe:Dfer_5750 surface antigen (D15); SPTR: Surface antigen (D15).
  
     0.473
Lbys_3129
Prolyl 4-hydroxylase alpha subunit; InterPro IPR006620; KEGG: bxe:Bxe_B1651 hypothetical protein; SMART: Prolyl 4-hydroxylase alpha subunit; SPTR: Putative uncharacterized protein.
  
     0.472
Lbys_2309
KEGG: coc:Coch_0630 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.470
Lbys_1210
PspC domain protein; InterPro IPR007168; KEGG: sli:Slin_0952 phage shock protein C, PspC; PFAM: PspC domain protein; SPTR: Phage shock protein C, PspC; PFAM: PspC domain.
  
     0.442
Lbys_0564
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: dfe:Dfer_2726 surface antigen (D15); PFAM: surface antigen (D15); SPTR: Surface antigen (D15); PFAM: Surface antigen.
  
     0.439
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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