Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lbys_3285KEGG: pfd:PFDG_03228 hypothetical protein; SPTR: Putative uncharacterized protein. (99 aa)    
Predicted Functional Partners:
Lbys_3286
YD repeat protein; InterPro IPR006530; KEGG: phe:Phep_1098 hypothetical protein; PFAM: YD repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: YD repeat protein; TIGRFAM: YD repeat (two copies).
       0.773
Lbys_3287
Hypothetical protein; KEGG: fjo:Fjoh_3729 YD repeat-/rhs repeat-containing protein; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain.
       0.773
Lbys_3288
KEGG: pyo:PY04558 hypothetical protein; SPTR: Outer capsid protein VP4.
       0.773
Lbys_3290
KEGG: bth:BT_2927 putative cell wall-associated protein precursor; SPTR: Putative uncharacterized protein; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
       0.436
Lbys_3291
KEGG: ptm:GSPATT00024180001 hypothetical protein; SPTR: Chromosome undetermined scaffold_82, whole genome shotgun sequence.
       0.436
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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