STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3315Thioredoxin domain-containing protein; InterPro IPR017936:IPR017937:IPR013766; KEGG: sli:Slin_1362 hypothetical protein; PFAM: Thioredoxin domain-containing protein; SPTR: Putative uncharacterized protein; PFAM: Thioredoxin; TIGRFAM: bacteriocin transport accessory protein, putative. (377 aa)    
Predicted Functional Partners:
Lbys_3319
COGs: COG0450 Peroxiredoxin; InterPro IPR017936:IPR000866:IPR019479; KEGG: dfe:Dfer_5194 peroxidase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; PRIAM: Peroxidase; SPTR: Peroxidase; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family.
  
 0.729
Lbys_3316
Thioredoxin domain-containing protein; InterPro IPR017936:IPR013766; KEGG: sli:Slin_1362 hypothetical protein; PFAM: Thioredoxin domain-containing protein; SPTR: Putative uncharacterized protein; PFAM: Thioredoxin.
 
    
0.682
Lbys_3317
Hypothetical protein; InterPro IPR017936; KEGG: sli:Slin_1362 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255.
 
    
0.671
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.610
Lbys_2956
Protein-disulfide reductase; COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR017936; KEGG: dfe:Dfer_4173 cytochrome c biogenesis protein transmembrane region; PRIAM: Protein-disulfide reductase; SPTR: Cytochrome c biogenesis protein transmembrane region; PFAM: Disulphide bond corrector protein DsbC; Cytochrome C biogenesis protein transmembrane region; Protein of unknown function, DUF255.
  
 
 0.602
Lbys_3314
COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660:IPR006504; KEGG: dfe:Dfer_4992 arsenate reductase and related; PFAM: arsenate reductase and related; SPTR: Arsenate reductase and related; PFAM: ArsC family; TIGRFAM: transcriptional regulator, Spx/MgsR family; Belongs to the ArsC family.
  
  
 0.592
Lbys_2711
KEGG: sli:Slin_0229 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
   0.587
Lbys_1921
Conserved repeat domain protein; InterPro IPR000601:IPR019775:IPR001434; KEGG: sli:Slin_3586 conserved repeat domain protein; PFAM: protein of unknown function DUF11; SPTR: Conserved repeat domain protein; TIGRFAM: conserved repeat domain protein; TIGRFAM: conserved repeat domain.
  
     0.572
Lbys_3217
InterPro IPR019734:IPR013026; KEGG: dfe:Dfer_4061 tetratricopeptide TPR_2 repeat protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
  
 
  0.572
Lbys_3334
Hypothetical protein; KEGG: chu:CHU_2149 glycoside hydrolase family 5 protein; SPTR: CHU large protein; candidate retaining b-glycosidase, glycoside hydrolase family 5 protein.
  
     0.568
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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