STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3358Hypothetical protein; KEGG: rno:297342 ELMO/CED-12 domain containing 3; SPTR: ELMO domain-containing protein 3. (77 aa)    
Predicted Functional Partners:
Lbys_3357
TonB-dependent receptor plug; InterPro IPR012910; KEGG: sli:Slin_1167 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain.
       0.527
Lbys_3359
Hypothetical protein.
       0.527
Lbys_3356
KEGG: dfe:Dfer_2722 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.488
Lbys_3355
Hypothetical protein; KEGG: sli:Slin_1164 domain of unknown function DUF1735; SPTR: Putative uncharacterized protein.
       0.452
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.