Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_3373Bile acid:sodium symporter; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: lbl:LBL_0851 sodium-dependent transporter; PFAM: Bile acid:sodium symporter; SPTR: Sodium-dependent transporter; PFAM: Sodium Bile acid symporter family; TIGRFAM: bile acid transporter. (287 aa)    
Predicted Functional Partners:
Lbys_3370
KEGG: dfe:Dfer_4310 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Lbys_3371
Neuraminidase (sialidase)-like protein; COGs: COG4692 neuraminidase (sialidase); KEGG: sus:Acid_2658 neuraminidase (sialidase)-like protein; SPTR: Neuraminidase (Sialidase)-like protein; PFAM: BNR/Asp-box repeat.
       0.773
Lbys_3372
YdjC family protein; COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: dfe:Dfer_4311 YdjC family protein; PFAM: YdjC family protein; SPTR: YdjC family protein; PFAM: YdjC-like protein.
       0.773
Lbys_3375
Metallophosphoesterase; InterPro IPR004843; KEGG: zpr:ZPR_2508 calcineurin-like phosphoesterase; PFAM: metallophosphoesterase; SPTR: Calcineurin-like phosphoesterase; PFAM: Calcineurin-like phosphoesterase.
 
     0.571
Lbys_3369
Carbamoyltransferase; COGs: COG2192 carbamoyl transferase NodU family; InterPro IPR003696; KEGG: dfe:Dfer_2812 carbamoyltransferase; PFAM: Carbamoyltransferase; SPTR: Carbamoyltransferase; PFAM: Carbamoyltransferase.
  
    0.547
Lbys_3367
KEGG: sli:Slin_4251 membrane protein; SPTR: Putative uncharacterized protein.
       0.519
Lbys_3368
KEGG: sli:Slin_4252 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.519
Lbys_3378
KEGG: dfe:Dfer_3218 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.495
Lbys_3374
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: dfe:Dfer_4314 transcriptional regulator, LuxR family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expan [...]
       0.488
Lbys_3376
TonB-dependent receptor plug; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3220 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
       0.417
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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