STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3378KEGG: dfe:Dfer_3218 hypothetical protein; SPTR: Putative uncharacterized protein. (402 aa)    
Predicted Functional Partners:
Lbys_3379
COGs: COG4287 PhoPQ-activated pathogenicity-related protein; InterPro IPR009199; KEGG: sli:Slin_6614 PhoPQ-activated pathogenicity-related protein PqaA type; PFAM: PhoPQ-activated pathogenicity-related protein PqaA type; SPTR: PhoPQ-activated pathogenicity-related protein PqaA type; PFAM: PhoPQ-activated pathogenicity-related protein.
 
     0.949
Lbys_3377
KEGG: dfe:Dfer_3219 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.945
Lbys_3376
TonB-dependent receptor plug; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3220 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
     0.936
Lbys_3375
Metallophosphoesterase; InterPro IPR004843; KEGG: zpr:ZPR_2508 calcineurin-like phosphoesterase; PFAM: metallophosphoesterase; SPTR: Calcineurin-like phosphoesterase; PFAM: Calcineurin-like phosphoesterase.
 
     0.874
Lbys_1408
COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR006680:IPR003764; KEGG: dfe:Dfer_2786 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase.
  
 
 0.864
Lbys_3370
KEGG: dfe:Dfer_4310 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.859
Lbys_3372
YdjC family protein; COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: dfe:Dfer_4311 YdjC family protein; PFAM: YdjC family protein; SPTR: YdjC family protein; PFAM: YdjC-like protein.
 
     0.838
Lbys_3371
Neuraminidase (sialidase)-like protein; COGs: COG4692 neuraminidase (sialidase); KEGG: sus:Acid_2658 neuraminidase (sialidase)-like protein; SPTR: Neuraminidase (Sialidase)-like protein; PFAM: BNR/Asp-box repeat.
 
     0.752
Lbys_3374
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: dfe:Dfer_4314 transcriptional regulator, LuxR family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expan [...]
 
     0.751
Lbys_3381
Transcriptional regulator, AraC family; COGs: COG1609 Transcriptional regulators; InterPro IPR018060:IPR018062:IPR001761:IPR000005; KEGG: sli:Slin_6583 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; manually curated; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; family.
 
  
 0.719
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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