STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3383KEGG: fba:FIC_00448 hypothetical protein; SPTR: Putative uncharacterized protein. (95 aa)    
Predicted Functional Partners:
Lbys_0322
KEGG: enc:ECL_03598 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.417
Lbys_0496
KEGG: phe:Phep_4095 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.403
pgi
COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001672:IPR018189; KEGG: dfe:Dfer_1231 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); PRIAM: Glucose-6-phosphate isomerase; SPTR: Glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase; Belongs to the GPI family.
       0.401
Lbys_3385
Glycoside hydrolase family 25; COGs: COG3757 Lyzozyme M1 (1 4-beta-N-acetylmuramidase); InterPro IPR018077:IPR002053; KEGG: bfr:BF3098 putative glycosylhydrolase; PFAM: glycoside hydrolase family 25; SMART: Glycoside hydrolase, family 25 subgroup; SPTR: Putative glycosylhydrolase; PFAM: Glycosyl hydrolases family 25.
       0.401
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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