STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3399InterPro IPR000620; KEGG: coc:Coch_1833 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Integral membrane protein; PFAM: EamA-like transporter family. (304 aa)    
Predicted Functional Partners:
Lbys_3400
Hypothetical protein; KEGG: msv:Mesil_3342 phosphoribosylglycinamide synthetase, N-domain protein; SPTR: Phosphoribosylglycinamide synthetase, N-domain protein.
       0.773
Lbys_3401
KEGG: mpd:MCP_0930 hypothetical protein; SPTR: Serine/threonine protein kinase.
       0.762
Lbys_3402
Hypothetical protein; KEGG: snc:HMPREF0837_10106 maltose/maltodextrin ABC superfamily transporter ATP-binding protein; SPTR: Maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein.
       0.762
Lbys_3403
Histidine kinase; COGs: COG4585 Signal transduction histidine kinase; InterProIPR019734:IPR005467:IPR013026:IPR001440:IPR 011712:IPR003594; KEGG: phe:Phep_2111 ATP-binding region ATPase domain protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Tetratricopeptide TPR_1 repeat-containing protein; SPTR: ATP-binding region ATPase domain protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
    0.532
Lbys_3404
Two component transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: dfe:Dfer_4502 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family.
       0.519
Lbys_0099
KEGG: fjo:Fjoh_0107 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2874).
  
     0.443
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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