Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3418KEGG: dfe:Dfer_4669 hypothetical protein; SPTR: Putative uncharacterized protein. (195 aa)    
Predicted Functional Partners:
Lbys_3417
COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR003567:IPR002541; KEGG: dfe:Dfer_5080 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF.
 
     0.844
Lbys_3538
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
     0.753
Lbys_2654
KEGG: chu:CHU_2654 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.752
Lbys_1727
KEGG: sli:Slin_3228 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.747
Lbys_0466
KEGG: dfe:Dfer_4875 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.739
Lbys_1667
KEGG: sli:Slin_2995 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.737
Lbys_2285
Hypothetical protein; InterPro IPR013026:IPR022272; KEGG: dfe:Dfer_3762 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein.
  
     0.728
Lbys_1721
InterPro IPR019847; KEGG: sli:Slin_3222 gliding motility associated protein GldN; SPTR: Gliding motility associated protein GldN; TIGRFAM: gliding motility associated protien GldN; TIGRFAM: gliding motility associated protien GldN.
  
     0.717
Lbys_2179
Hypothetical protein; InterPro IPR001412; KEGG: sli:Slin_5618 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.710
Lbys_0748
Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
  
     0.703
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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