STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3424TonB-dependent receptor; InterPro IPR018247:IPR002105:IPR012910:IPR000531; KEGG: sli:Slin_6529 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor. (1040 aa)    
Predicted Functional Partners:
Lbys_3425
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_6530 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
 
 
   0.947
Lbys_3427
COGs: COG4124 Beta-mannanase; InterPro IPR000805:IPR016714; KEGG: fjo:Fjoh_4953 glycoside hydrolase family protein; PRIAM: Mannan endo-1,4-beta-mannosidase; SPTR: Mannase; PFAM: Glycosyl hydrolase family 26; Belongs to the glycosyl hydrolase 26 family.
 
     0.811
Lbys_0271
RagB/SusD domain protein; InterPro IPR012944; KEGG: pru:PRU_2696 putative lipoprotein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
 
   0.789
Lbys_0375
RagB/SusD domain protein; InterPro IPR012944; KEGG: fjo:Fjoh_2021 RagB/SusD domain-containing protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
 
   0.767
Lbys_0834
RagB/SusD domain protein; InterPro IPR012944; KEGG: bvu:BVU_0842 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
 
   0.756
Lbys_2312
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_5058 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
     0.734
Lbys_3426
InterPro IPR002909; KEGG: sli:Slin_6531 cell surface receptor IPT/TIG domain protein; PFAM: cell surface receptor IPT/TIG domain protein; SPTR: Cell surface receptor IPT/TIG domain protein; PFAM: IPT/TIG domain.
       0.714
Lbys_0005
RagB/SusD domain protein; InterPro IPR012944; KEGG: pru:PRU_2611 putative lipoprotein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
     0.697
Lbys_3430
N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man).
 
     0.695
Lbys_3428
COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: zpr:ZPR_0356 Na+/glucose symporter; PFAM: Na+/solute symporter; SPTR: Na+/glucose symporter; PFAM: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.668
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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