STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3496KEGG: cpi:Cpin_1878 hypothetical protein; SPTR: Putative uncharacterized protein. (156 aa)    
Predicted Functional Partners:
Lbys_2252
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.953
Lbys_3498
COGs: COG0308 Aminopeptidase N; KEGG: cpi:Cpin_1880 putative aminopeptidase; SPTR: Putative aminopeptidase.
 
     0.877
Lbys_3497
KEGG: phe:Phep_3468 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.853
Lbys_3494
Endoribonuclease L-PSP; COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: cpi:Cpin_7001 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP.
  
 
 0.773
Lbys_3493
COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: pdi:BDI_1327 putative peptidase; PFAM: peptidase M19 renal dipeptidase; SPTR: Putative peptidase; PFAM: Membrane dipeptidase (Peptidase family M19).
       0.746
Lbys_3495
Amidohydrolase 3; COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: sli:Slin_3234 amidohydrolase 3; PFAM: Amidohydrolase 3; SPTR: Amidohydrolase family protein; PFAM: Amidohydrolase family.
       0.746
Lbys_1207
KEGG: dfe:Dfer_4107 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.549
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
  
  
 0.542
Lbys_0620
InterPro IPR000834; KEGG: sli:Slin_2535 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A; PFAM: Zinc carboxypeptidase.
  
     0.535
Lbys_1875
KEGG: sli:Slin_3992 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 0.525
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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