STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3522KEGG: sli:Slin_1752 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2452). (153 aa)    
Predicted Functional Partners:
Lbys_3523
Protein of unknown function DUF55; COGs: COG2947 conserved hypothetical protein; InterPro IPR002740; KEGG: dfe:Dfer_1217 protein of unknown function DUF55; PFAM: protein of unknown function DUF55; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF55.
       0.773
Lbys_3524
KEGG: dfe:Dfer_1218 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Lbys_3525
KEGG: dfe:Dfer_1218 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Lbys_3155
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: dfe:Dfer_3223 surface antigen variable number repeat protein; PFAM: surface antigen variable number repeat-containing protein; SPTR: Surface antigen variable number repeat protein; PFAM: Surface antigen variable number repeat.
  
     0.586
Lbys_0662
KEGG: dfe:Dfer_4263 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.582
Lbys_3526
InterPro IPR019734:IPR013026:IPR001440; KEGG: sli:Slin_2220 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
       0.580
thrS
Ser-tRNA(Thr) hydrolase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
       0.580
Lbys_0889
KEGG: sli:Slin_2427 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.562
Lbys_3521
Hypothetical protein; KEGG: dfe:Dfer_4136 Rieske (2Fe-2S) domain protein; SPTR: Putative uncharacterized protein.
       0.546
Lbys_0752
Peptidase S41; InterPro IPR005151; KEGG: sli:Slin_5254 peptidase S41; PFAM: peptidase S41; SPTR: Peptidase S41; PFAM: Peptidase family S41.
  
     0.545
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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