STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3540SCP-like extracellular; COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: coc:Coch_0827 SCP-like extracellular; PFAM: SCP-like extracellular; SPTR: Putative lipoprotein; PFAM: Cysteine-rich secretory protein family. (147 aa)    
Predicted Functional Partners:
Lbys_2350
InterPro IPR006104; KEGG: bth:BT_4145 hypothetical protein; PFAM: glycoside hydrolase family 2 sugar binding; SPTR: Sugar binding domain protein, glycosyl hydrolase family 2; PFAM: Glycosyl hydrolases family 2, sugar binding domain.
  
    0.765
Lbys_3539
COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: sli:Slin_1109 nitrogen-fixing NifU domain protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: Nitrogen-fixing NifU domain protein; PFAM: NifU-like domain.
       0.648
Lbys_3538
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.492
Lbys_3541
KEGG: sli:Slin_0499 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: OmpA family.
       0.483
Lbys_3535
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_5120 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2.
       0.468
Lbys_3536
Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).
       0.468
Lbys_3537
Ribonuclease H-related protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
       0.468
Lbys_3534
KEGG: phe:Phep_3540 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.460
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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