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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3541KEGG: sli:Slin_0499 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: OmpA family. (399 aa)    
Predicted Functional Partners:
Lbys_3542
GSCFA domain protein; InterPro IPR014982; KEGG: sli:Slin_1111 GSCFA domain protein; PFAM: GSCFA domain protein; SPTR: Lipoprotein, putative; PFAM: GSCFA family.
       0.547
Lbys_1280
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterProIPR011659:IPR006665:IPR019734:IPR013026:IPR 006664; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
  
 
 0.488
Lbys_3540
SCP-like extracellular; COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: coc:Coch_0827 SCP-like extracellular; PFAM: SCP-like extracellular; SPTR: Putative lipoprotein; PFAM: Cysteine-rich secretory protein family.
       0.483
Lbys_3543
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.476
Lbys_1529
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterProIPR001440:IPR011659:IPR006665:IPR019734:IPR 013026:IPR006664; KEGG: dfe:Dfer_4338 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; Tetratricopeptide TPR_1 repeat-containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; Tetratricopeptide repeat; OmpA family.
  
 
 0.430
Lbys_3539
COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: sli:Slin_1109 nitrogen-fixing NifU domain protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: Nitrogen-fixing NifU domain protein; PFAM: NifU-like domain.
     
 0.421
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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