STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3544COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_2368 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase. (480 aa)    
Predicted Functional Partners:
Lbys_0272
Esterase; COGs: COG0627 esterase; InterPro IPR000801; KEGG: dfe:Dfer_0298 putative esterase; PFAM: esterase; SPTR: Putative uncharacterized protein; PFAM: Putative esterase.
    
 0.643
Lbys_3543
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.551
Lbys_2876
KEGG: sli:Slin_0027 esterase/lipase-like protein; SPTR: Putative uncharacterized protein.
 
     0.534
Lbys_3542
GSCFA domain protein; InterPro IPR014982; KEGG: sli:Slin_1111 GSCFA domain protein; PFAM: GSCFA domain protein; SPTR: Lipoprotein, putative; PFAM: GSCFA family.
       0.478
Lbys_1523
COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: bsu:BSU34440 penicillin-binding protein 4*; PFAM: beta-lactamase; SPTR: Penicillin-binding protein 4*; PFAM: Beta-lactamase; Domain of unknown function (DUF3471).
  
     0.457
Lbys_2821
COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_4919 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase.
  
     0.446
Lbys_1318
InterPro IPR013222; KEGG: nwi:Nwi_0540 hypothetical protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; SPTR: Carbohydrate-binding CenC domain protein; PFAM: NPCBM/NEW2 domain.
  
     0.439
Lbys_0693
COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: phe:Phep_2231 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase.
  
     0.411
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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