STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3547Putative RNA polymerase, sigma 70 family subunit; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR014284; KEGG: nml:Namu_1556 putative RNA polymerase, sigma-24 subunit, ECF subfamily; SPTR: Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (387 aa)    
Predicted Functional Partners:
Lbys_3548
YCII-related protein; InterPro IPR005545; KEGG: zpr:ZPR_3313 DGPFAETKE domain-containing protein; PFAM: YCII-related; SPTR: DGPFAETKE domain-containing protein; PFAM: YCII-related domain.
 
     0.950
Lbys_3545
COGs: COG2367 Beta-lactamase class A; KEGG: phe:Phep_3104 beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase.
       0.773
Lbys_3546
KEGG: cpi:Cpin_1415 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255.
       0.773
Lbys_1034
Glyoxalase/bleomycin resistance protein/dioxygenase; COGs: COG3607 lactoylglutathione lyase; InterPro IPR004360; KEGG: aas:Aasi_0443 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.601
Lbys_3549
KEGG: coc:Coch_2117 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: Ferredoxin III.
       0.572
Lbys_3550
Collagenase; COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: zpr:ZPR_0087 collagenase; PFAM: peptidase U32; SPTR: Collagenase; PFAM: Peptidase family U32.
       0.572
Lbys_0706
3-demethylubiquinone-9 3-methyltransferase; COGs: COG3865 conserved hypothetical protein; InterPro IPR009725; KEGG: art:Arth_2204 3-demethylubiquinone-9 3-methyltransferase; SPTR: 3-demethylubiquinone-9 3-methyltransferase; PFAM: 3-demethylubiquinone-9 3-methyltransferase.
 
     0.503
Lbys_3551
Hypothetical protein; KEGG: nmu:Nmul_A0300 O-antigen polymerase; SPTR: O-antigen polymerase.
       0.404
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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