STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3565Copper-translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; InterProIPR018303:IPR000150:IPR001757:IPR001756:IPR 006121:IPR008250:IPR005834:IPR006403:IPR006416; KEGG: chu:CHU_1499 cation-transporting ATPase; copper-exporting ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Copper-exporting ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Heavy- [...] (772 aa)    
Predicted Functional Partners:
Lbys_3564
Heavy metal-associated protein; InterPro IPR006121; KEGG: zpr:ZPR_4233 heavy metal-associated protein; SPTR: Heavy metal-associated protein; PFAM: Heavy-metal-associated domain.
 
 
 0.964
Lbys_0547
KEGG: fjo:Fjoh_3064 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Heavy-metal-associated domain; Protein of unknown function (DUF3347).
  
 
 0.602
Lbys_0867
InterPro IPR006121; KEGG: dfe:Dfer_3112 heavy metal transport/detoxification protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Heavy metal transport/detoxification protein; PFAM: Heavy-metal-associated domain.
  
 
 0.602
Lbys_3566
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439; KEGG: sli:Slin_1762 ABC transporter related protein; PFAM: ABC transporter related; SPTR: ABC transporter related protein; PFAM: ABC transporter.
  
 
 0.587
Lbys_3567
KEGG: sli:Slin_1761 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.548
Lbys_3562
KEGG: sli:Slin_4633 putative transmembrane anti-sigma factor; SPTR: Putative transmembrane anti-sigma factor.
       0.522
Lbys_3563
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_4632 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.522
Lbys_3560
KEGG: sli:Slin_4635 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.515
Lbys_3561
KEGG: sli:Slin_4634 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.515
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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