STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3569KEGG: sli:Slin_3627 hypothetical protein; SPTR: Putative uncharacterized protein. (212 aa)    
Predicted Functional Partners:
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.773
Lbys_0931
KEGG: sli:Slin_2039 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.558
Lbys_3570
KEGG: fph:Fphi_1177 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.543
Lbys_0292
YceI family protein; InterPro IPR007372; KEGG: dfe:Dfer_0371 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain; Belongs to the UPF0312 family.
  
     0.496
Lbys_2907
KEGG: sli:Slin_5353 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.447
Lbys_3425
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_6530 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
  
    0.447
Lbys_2904
KEGG: sli:Slin_5175 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.442
Lbys_1280
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterProIPR011659:IPR006665:IPR019734:IPR013026:IPR 006664; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
  
 
 0.419
Lbys_3308
KEGG: sli:Slin_3137 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.418
Lbys_1869
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_2453 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
  
    0.417
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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