Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_3577KEGG: chu:CHU_3661 hypothetical protein; SPTR: Putative uncharacterized protein. (154 aa)    
Predicted Functional Partners:
Lbys_3578
Peptidyl-dipeptidase Dcp; COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: sli:Slin_0934 peptidyl-dipeptidase DCP; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Putative peptidyl-dipeptidase; PFAM: Peptidase family M3.
       0.524
Lbys_0756
InterPro IPR007922; KEGG: dfe:Dfer_2709 protein of unknown function DUF721; PFAM: protein of unknown function DUF721; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF721).
  
     0.422
Lbys_3352
KEGG: fjo:Fjoh_1859 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.416
Lbys_2734
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR013229:IPR012910:IPR000531; KEGG: dfe:Dfer_3569 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; PEGA domain protein; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; PEGA domain.
  
     0.407
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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