STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3583Gliding motility-associated protein GldC; InterPro IPR019854; KEGG: dfe:Dfer_0458 motility-like protein; SPTR: Motility-like protein; TIGRFAM: gliding motility-associated protein GldC; TIGRFAM: gliding motility-associated protein GldC. (135 aa)    
Predicted Functional Partners:
Lbys_3582
KEGG: sli:Slin_1358 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.779
Lbys_3347
Protein of unknown function DUF2480; InterPro IPR018914; KEGG: sli:Slin_4879 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2480).
  
     0.755
Lbys_2646
KEGG: sli:Slin_5545 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.740
Lbys_2594
KEGG: dfe:Dfer_3789 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.723
Lbys_1137
KEGG: dfe:Dfer_0440 acyl-CoA reductase; SPTR: Acyl-CoA reductase; PFAM: Acyl-CoA reductase (LuxC).
  
     0.697
Lbys_2105
KEGG: dfe:Dfer_3011 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490).
  
     0.653
Lbys_0943
KEGG: dfe:Dfer_1060 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.642
Lbys_0558
KEGG: sli:Slin_2013 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.634
Lbys_1722
InterPro IPR019859; KEGG: sli:Slin_3223 gliding motility-associated protein GldM; SPTR: Gliding motility-associated protein GldM; TIGRFAM: gliding motility-associated protein GldM; PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM.
  
     0.605
Lbys_3217
InterPro IPR019734:IPR013026; KEGG: dfe:Dfer_4061 tetratricopeptide TPR_2 repeat protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
  
     0.600
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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