STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3584Peptidase S8 and S53 subtilisin kexin sedolisin; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: dfe:Dfer_5007 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Peptidase families S8 and S53 domain protein; PFAM: Subtilase family. (527 aa)    
Predicted Functional Partners:
Lbys_2177
KEGG: dfe:Dfer_4247 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
   0.847
Lbys_0610
KEGG: dfe:Dfer_4465 gliding motility-related protein; SPTR: Gliding motility-related protein.
  
 
   0.805
Lbys_0531
Peptidase S8 and S53 subtilisin kexin sedolisin; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: pdi:BDI_3426 putative calcium dependent protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Putative calcium dependent protease; PFAM: Subtilase family; Belongs to the peptidase S8 family.
  
   
 0.524
Lbys_2675
COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: dfe:Dfer_3628 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase.
   
   0.504
Lbys_3435
COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179:IPR000774; KEGG: cpi:Cpin_1944 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase.
   
   0.504
Lbys_2176
KEGG: sli:Slin_5949 hypothetical protein; SPTR: Fjo24; PFAM: Peptidase family C25.
  
    0.488
Lbys_3172
InterPro IPR005632; KEGG: sli:Slin_4435 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); manually curated; PFAM: Outer membrane protein (OmpH-like).
  
     0.440
Lbys_1182
InterPro IPR000297; KEGG: sli:Slin_0807 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: OmpA family; PPIC-type PPIASE domain.
 
   
 0.432
Lbys_1024
Hypothetical protein; InterPro IPR005829; KEGG: sli:Slin_1918 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Pregnancy-associated plasma protein-A.
 
 
 
 0.411
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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