STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3597Ferric uptake regulator family protein; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: phe:Phep_2685 ferric uptake regulator family protein; SPTR: Fur family transcriptional regulator protein; PFAM: Ferric uptake regulator family; Belongs to the Fur family. (136 aa)    
Predicted Functional Partners:
Lbys_3596
Heavy metal translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; InterProIPR018303:IPR001757:IPR008250:IPR005834:IPR 006404:IPR006416; KEGG: spc:Sputcn32_1966 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Zinc-exporting ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPas [...]
 
   
 0.788
Lbys_3598
KEGG: sli:Slin_6747 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.779
Lbys_3599
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_1589 efflux transporter, RND family, MFP subunit; SPTR: RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.653
Lbys_3600
Heavy metal efflux pump, CzcA family; COGs: COG3696 Putative silver efflux pump; InterPro IPR001036:IPR004763; KEGG: dfe:Dfer_1588 heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: AcrB/AcrD/AcrF family; Outer membrane efflux protein; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.614
Lbys_3602
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fps:FP0881 membrane fusion efflux protein precursor; SPTR: Membrane fusion efflux protein; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.496
Lbys_3319
COGs: COG0450 Peroxiredoxin; InterPro IPR017936:IPR000866:IPR019479; KEGG: dfe:Dfer_5194 peroxidase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; PRIAM: Peroxidase; SPTR: Peroxidase; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family.
  
  
 0.495
Lbys_3601
KEGG: fjo:Fjoh_3348 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
       0.492
Lbys_0939
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.472
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.459
Lbys_3564
Heavy metal-associated protein; InterPro IPR006121; KEGG: zpr:ZPR_4233 heavy metal-associated protein; SPTR: Heavy metal-associated protein; PFAM: Heavy-metal-associated domain.
 
   
 0.458
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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