STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_3604KEGG: fjo:Fjoh_3934 hypothetical protein; SPTR: Putative uncharacterized protein. (124 aa)    
Predicted Functional Partners:
Lbys_3602
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fps:FP0881 membrane fusion efflux protein precursor; SPTR: Membrane fusion efflux protein; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.621
Lbys_3603
Heavy metal efflux pump, CzcA family; COGs: COG3696 Putative silver efflux pump; InterPro IPR001036:IPR004763; KEGG: fjo:Fjoh_4462 CzcA family heavy metal efflux protein; PFAM: acriflavin resistance protein; SPTR: Possible RND superfamily resistance-nodulation-cell division [ligand]:proton (H+) antiporter; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.611
Lbys_3605
Carboxymethylenebutenolidase; COGs: COG0412 Dienelactone hydrolase; KEGG: sli:Slin_1487 carboxymethylenebutenolidase; PRIAM: Carboxymethylenebutenolidase; SPTR: Carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase family.
       0.542
Lbys_3601
KEGG: fjo:Fjoh_3348 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
       0.496
Lbys_3600
Heavy metal efflux pump, CzcA family; COGs: COG3696 Putative silver efflux pump; InterPro IPR001036:IPR004763; KEGG: dfe:Dfer_1588 heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: AcrB/AcrD/AcrF family; Outer membrane efflux protein; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.481
Lbys_3599
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_1589 efflux transporter, RND family, MFP subunit; SPTR: RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.462
Lbys_3606
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR002410:IPR000073; KEGG: cpi:Cpin_4568 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Proline iminopeptidase; PFAM: alpha/beta hydrolase fold.
       0.443
Lbys_3607
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: fjo:Fjoh_0563 ECF subfamily RNA polymerase sigma-24 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.443
Lbys_3608
KEGG: fjo:Fjoh_0562 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.443
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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