STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ16574.1KEGG: zpr:ZPR_3496 site-specific recombinase; SPTR: Site-specific recombinase; tmRNA as predicted by Rfam (RF00023), score 115.44; PFAM: Recombinase. (311 aa)    
Predicted Functional Partners:
Lbys_0825
Putative transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; KEGG: fjo:Fjoh_0475 cyclic nucleotide-binding protein; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain.
 
     0.668
Lbys_1375
Vitamin K epoxide reductase; InterPro IPR012932:IPR005074; KEGG: dfe:Dfer_5247 peptidase C39 bacteriocin processing; PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase; SPTR: Putative uncharacterized protein; PFAM: Peptidase C39 family; Vitamin K epoxide reductase family.
  
     0.475
Lbys_0490
KEGG: geo:Geob_2303 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
  
    0.462
Lbys_0109
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710:IPR000421; KEGG: bvu:BVU_1123 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; coagulation factor 5/8 type domain protein; SPTR: Glycoside hydrolase family 43 protein; PFAM: F5/8 type C domain; Glycosyl hydrolases family 43.
  
     0.454
Lbys_1567
UspA domain-containing protein; InterPro IPR006016:IPR006015; KEGG: phe:Phep_2459 UspA domain protein; PFAM: UspA domain-containing protein; SPTR: Universal stress protein; PFAM: Universal stress protein family.
  
   
 0.446
Lbys_0824
COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR020471:IPR001395; KEGG: bxe:Bxe_B0797 putative aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Putative aldo/keto reductase; PFAM: Aldo/keto reductase family.
       0.419
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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