STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0042Transcriptional regulator, ArsR family; COGs: COG0640 transcriptional regulator protein; InterPro IPR001845:IPR011991; KEGG: ddr:Deide_2p00101 putative transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1XMQ5 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (114 aa)    
Predicted Functional Partners:
Trad_0043
Cation efflux protein; COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR006121:IPR002524; KEGG: prw:PsycPRwf_0699 cation efflux protein; PFAM: cation efflux protein; SPTR: A2TNV0 Integral membrane protein; PFAM: Cation efflux family; Heavy-metal-associated domain.
     
 0.794
Trad_1583
Transcriptional regulator, ArsR family; InterPro IPR001845:IPR018334:IPR011991; KEGG: dra:DR_A0071 transcriptional repressor SmtB; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Q9RZ83 Transcriptional repressor SmtB; PFAM: Bacterial regulatory protein, arsR family.
  
     0.445
Trad_0044
Conserved hypothetical protein; COGs: COG3666 Transposase and inactivated derivatives; KEGG: ana:alr7249 hypothetical protein; SPTR: Q8YKP4 Alr7249 protein; PFAM: Transposase domain (DUF772).
       0.429
Trad_1509
Bile acid:sodium symporter; COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR002657; KEGG: amt:Amet_1885 bile acid:sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: A6TPD2 Bile acid:sodium symporter; PFAM: Sodium Bile acid symporter family.
 
  
 0.414
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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