STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0044Conserved hypothetical protein; COGs: COG3666 Transposase and inactivated derivatives; KEGG: ana:alr7249 hypothetical protein; SPTR: Q8YKP4 Alr7249 protein; PFAM: Transposase domain (DUF772). (541 aa)    
Predicted Functional Partners:
Trad_2457
COGs: COG4711 membrane protein; InterPro IPR013416; KEGG: mes:Meso_0637 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: Q11KN8 Putative integral membrane protein TIGR02587; TIGRFAM: integral membrane protein TIGR02587; PFAM: Putative integral membrane protein (DUF2391); TIGRFAM: putative integral membrane protein TIGR02587.
  
     0.581
Trad_2032
DoxX family protein; COGs: COG4270 membrane protein; InterPro IPR011637; KEGG: npu:Npun_R3477 hypothetical protein; PFAM: DoxX family protein; SPTR: B2J134 Putative uncharacterized protein; PFAM: DoxX.
  
     0.559
Trad_1882
InterPro IPR002934; KEGG: scl:sce6875 hypothetical protein; PFAM: DNA polymerase beta domain protein region; SPTR: A9GU72 Putative uncharacterized protein; PFAM: Nucleotidyltransferase domain.
  
     0.546
Trad_2456
InterPro IPR013417; KEGG: mes:Meso_0636 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: Q11KN9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2393); TIGRFAM: conserved hypothetical protein TIGR02588.
  
     0.495
Trad_1692
Cupin 2 conserved barrel domain protein; InterPro IPR013096:IPR014710:IPR011051; KEGG: mxa:MXAN_5309 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Q1D1L3 Putative uncharacterized protein; PFAM: Cupin domain.
  
     0.466
Trad_0042
Transcriptional regulator, ArsR family; COGs: COG0640 transcriptional regulator protein; InterPro IPR001845:IPR011991; KEGG: ddr:Deide_2p00101 putative transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1XMQ5 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family.
       0.429
Trad_0043
Cation efflux protein; COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR006121:IPR002524; KEGG: prw:PsycPRwf_0699 cation efflux protein; PFAM: cation efflux protein; SPTR: A2TNV0 Integral membrane protein; PFAM: Cation efflux family; Heavy-metal-associated domain.
       0.429
Trad_0504
Methyltransferase type 11; InterPro IPR013216; KEGG: cmu:TC0410 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q9PKQ5 Putative uncharacterized protein; PFAM: Methyltransferase domain.
  
     0.406
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.