STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0182Protein of unknown function DUF187; COGs: COG1649 conserved hypothetical protein; InterPro IPR003790; KEGG: ddr:Deide_2p00260 conserved hypothetical protein, precursor; PFAM: protein of unknown function DUF187; SPTR: C1D2P2 Putative uncharacterized protein; PFAM: Uncharacterised BCR, COG1649. (483 aa)    
Predicted Functional Partners:
Trad_0183
Mannose-6-phosphate isomerase, class I; COGs: COG1482 Phosphomannose isomerase; InterPro IPR001250:IPR014628:IPR011051:IPR014710; KEGG: rca:Rcas_1081 mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type I; PRIAM: Mannose-6-phosphate isomerase; SPTR: A7NI81 Mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: Phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I.
       0.778
Trad_0181
Glycoside hydrolase family 3 domain protein; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR017853:IPR019800; KEGG: cvi:CV_0259 glycosy hydrolase family protein; PFAM: glycoside hydrolase family 3 domain protein; SPTR: C1XRD5 Beta-glucosidase-like glycosyl hydrolase; PFAM: Glycosyl hydrolase family 3 N terminal domain.
       0.532
Trad_0180
Protein of unknown function DUF224 cysteine-rich region domain protein; COGs: COG0247 Fe-S oxidoreductase; InterProIPR017896:IPR004017:IPR009051:IPR012285:IPR 017900; KEGG: dge:Dgeo_0874 protein of unknown function DUF224, cysteine-rich region; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Q1J008 Fe-S oxidoreductase subunit (Cysteine-rich domain domain enzyme); PFAM: Cysteine-rich domain.
       0.493
Trad_0178
COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR012255:IPR014730:IPR014729; KEGG: dge:Dgeo_0719 electron transfer flavoprotein beta-subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SPTR: Q1J0G3 Electron transfer flavoprotein beta-subunit; PFAM: Electron transfer flavoprotein domain.
       0.450
Trad_0179
COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR001308:IPR014730:IPR014731:IPR014729; KEGG: dge:Dgeo_0720 electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; SPTR: Q1J0G2 Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain.
       0.450
Trad_2148
Competence/damage-inducible protein CinA; COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR001453:IPR008135:IPR008136; KEGG: ddr:Deide_19430 putative CinA-like protein; PFAM: molybdopterin binding domain; CinA domain protein; SPTR: C1CXY3 CinA-like protein; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain.
 
     0.419
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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