STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0345ABC transporter related protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR017871:IPR003439:IPR003593; KEGG: bbe:BBR47_56970 probable ABC transporter ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C0Z8P7 Probable ABC transporter ATP binding protein; PFAM: ABC transporter. (269 aa)    
Predicted Functional Partners:
Trad_1151
COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: gym:GYMC10_3810 transport system permease protein; PFAM: transport system permease protein; SPTR: B1I066 Putative uncharacterized protein; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.949
Trad_1152
COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: gym:GYMC10_3811 transport system permease protein; PFAM: transport system permease protein; SPTR: C0ZJ94 Probable ABC transporter permease protein; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.949
Trad_0112
COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: tth:TT_P0178 hemin transport system permease protein HmuU; PFAM: transport system permease protein; SPTR: C1XW08 ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.923
Trad_0671
COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: dge:Dgeo_0024 transport system permease protein; PFAM: transport system permease protein; SPTR: Q1J2F6 ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.923
Trad_1153
Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: rxy:Rxyl_0413 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Q1AYZ1 Periplasmic binding protein; PFAM: Periplasmic binding protein.
 
 
 0.922
Trad_1157
COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: gvi:gll0579 hemin ABC transporter permease protein; PFAM: transport system permease protein; SPTR: Q7NN35 Hemin ABC transporter permease protein; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.913
Trad_1160
Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: cgt:cgR_2963 hypothetical protein; PFAM: periplasmic binding protein; SPTR: A4QIC0 Putative uncharacterized protein; PFAM: Periplasmic binding protein.
 
 
 0.907
Trad_1163
Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: sro:Sros_3470 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: C1WJU6 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
 
 
 0.906
Trad_2343
ABC transporter related protein; COGs: COG4555 ABC-type Na+ transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dra:DR_0927 sodium extrusion protein NatA; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q9RVU5 Sodium extrusion protein NatA; PFAM: ABC transporter.
 
   
0.851
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
  
 0.822
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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