STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0373CMP/dCMP deaminase zinc-binding protein; COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125:IPR016193; KEGG: npu:Npun_R2274 CMP/dCMP deaminase, zinc-binding; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Q8YND2 Alr4634 protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region. (153 aa)    
Predicted Functional Partners:
hisI
phosphoribosyl-ATP diphosphatase; COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496:IPR008179; KEGG: rxy:Rxyl_2116 phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; SPTR: Q1AU68 Phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; In the N-terminal section; belongs to the PRA [...]
   
  
 0.933
Trad_0374
Protein of unknown function DUF2419; InterPro IPR019438; KEGG: tro:trd_1774 hypothetical protein; PFAM: Protein of unknown function DUF2419; SPTR: B9L162 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2419).
       0.773
Trad_0372
KEGG: ava:Ava_4088 hypothetical protein; SPTR: B4B2X0 Putative uncharacterized protein.
  
    0.679
tdk
COGs: COG1435 Thymidine kinase; InterPro IPR001267:IPR020633; KEGG: ddr:Deide_06660 putative thymidine kinase; PFAM: thymidine kinase; PRIAM: Thymidine kinase; SPTR: C1D0Z6 Thymidine kinase; PFAM: Thymidine kinase.
    
 0.563
udk
COGs: COG0572 Uridine kinase; InterPro IPR000764:IPR006083:IPR017975; KEGG: dge:Dgeo_0202 uridine kinase; PFAM: phosphoribulokinase/uridine kinase; PRIAM: Uridine kinase; SPTR: C1PB13 Uridine kinase; TIGRFAM: uridine kinase; PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase.
  
 
 0.548
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.536
Trad_0285
InterPro IPR001910; KEGG: pdi:BDI_1655 putative nucleoside hydrolase; PFAM: Inosine/uridine-preferring nucleoside hydrolase; SPTR: B7B871 Putative uncharacterized protein; PFAM: Inosine-uridine preferring nucleoside hydrolase.
    
  0.526
Trad_2826
COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: dra:DR_0299 deoxyguanosine kinase/deoxyadenosine kinase subunit; PFAM: deoxynucleoside kinase; SPTR: B7A800 Deoxynucleoside kinase; PFAM: Deoxynucleoside kinase.
    
  0.516
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.509
Trad_0087
COGs: COG1072 Panthothenate kinase; KEGG: ara:Arad_12443 phosphoribulokinase / uridine kinase family; SPTR: C1RLE1 Putative uncharacterized protein.
     
  0.499
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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