STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0420COGs: COG0785 Cytochrome c biogenesis protein; InterPro IPR003834; KEGG: gau:GAU_0930 cytochrome c-type biogenesis protein CcdA; PFAM: cytochrome c biogenesis protein transmembrane region; SPTR: C1XWX4 Cytochrome c biogenesis protein; PFAM: Cytochrome C biogenesis protein transmembrane region. (235 aa)    
Predicted Functional Partners:
Trad_0413
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; InterProIPR017937:IPR000866:IPR017936:IPR012336:IPR 012335; KEGG: ttj:TTHA1728 hypothetical protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Q5SHK2 Putative uncharacterized protein TTHA1728; PFAM: Redoxin; TIGRFAM: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily.
  
 0.971
Trad_0417
Cytochrome c assembly protein; COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR003557:IPR002541; KEGG: tth:TTC1041 heme exporter protein C; PFAM: cytochrome c assembly protein; SPTR: B7A5K7 Cytochrome c assembly protein; PFAM: Cytochrome C assembly protein.
  
  
 0.919
Trad_0418
COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR003544; KEGG: dra:DR_0407 cytochrome c-type biogenesis protein, heme exporter protein B; PFAM: cytochrome c-type biogenesis protein CcmB; SPTR: Q9RXA8 Cytochrome c-type biogenesis protein, heme exporter protein B; PFAM: CcmB protein; TIGRFAM: heme exporter protein CcmB.
  
  
 0.840
Trad_0419
Heme exporter protein CcmA; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR017871:IPR003439:IPR005895:IPR003593; KEGG: dra:DR_0406 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q9RXA9 ABC transporter, ATP-binding protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter; TIGRFAM: heme ABC exporter, ATP-binding protein CcmA.
       0.837
Trad_0798
Redoxin domain protein; COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; InterProIPR017936:IPR017937:IPR013740:IPR012335:IPR 012336; KEGG: ttj:TTHA0840 thiol:disulfide interchange protein; PFAM: Redoxin domain protein; SPTR: Q72KI7 Thiol:disulfide interchange protein tlpA; manually curated; PFAM: Redoxin.
 
  
 0.761
ccmE
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
     
 0.632
Trad_0414
COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR003567:IPR003568:IPR002541; KEGG: dra:DR_0346 cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; SPTR: Q9RXG7 Cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF.
     
 0.628
Trad_0412
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
     
 0.625
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
    
 0.548
Trad_0410
Rieske (2Fe-2S) iron-sulfur domain protein; COGs: COG0723 Rieske Fe-S protein; InterPro IPR005805:IPR017941; KEGG: dge:Dgeo_1251 Rieske (2Fe-2S) region; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Q1IYY7 Rieske (2Fe-2S) region; PFAM: Rieske [2Fe-2S] domain.
  
    0.523
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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