STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pheACOGs: COG0077 Prephenate dehydratase; InterPro IPR018528:IPR001086:IPR002912; KEGG: ttj:TTHA1104 prephenate dehydratase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; PRIAM: Prephenate dehydratase; SPTR: Q5SJB0 Prephenate dehydratase; PFAM: Prephenate dehydratase. (285 aa)    
Predicted Functional Partners:
Trad_1938
Phospho-2-dehydro-3-deoxyheptonate aldolase; COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterProIPR010954:IPR006268:IPR020822:IPR013785:IPR 002701:IPR006218; KEGG: ttj:TTHA0388 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; PFAM: DAHP synthetase I/KDSA; Chorismate mutase, type II; SPTR: Q5SLA5 Phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; chorismate mutase; PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate ald [...]
 
 0.996
Trad_2971
Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004838:IPR015421:IPR004839:IPR015424; KEGG: dra:DR_0623 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: Q9RWP3 Aspartate aminotransferase; PFAM: Aminotransferase class I and II.
 
 
 0.990
Trad_2766
COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099:IPR002912:IPR016040; KEGG: dge:Dgeo_1040 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein; SPTR: Q1IZJ5 Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; ACT domain.
 
 0.966
hisC
COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterProIPR001917:IPR004839:IPR015424:IPR015421:IPR 005861; KEGG: dge:Dgeo_0118 aminotransferase, class I and II; PFAM: aminotransferase class I and II; SPTR: Q1J263 Aminotransferase, class I and II; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
 
 
 0.936
Trad_1724
COGs: COG4401 Chorismate mutase; InterPro IPR008243:IPR013813; KEGG: ttj:TTHA0868 chorismate mutase; PFAM: Chorismate mutase of the AroH class; SPTR: C1XFC3 Chorismate mutase; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase type I; TIGRFAM: monofunctional chorismate mutase, gram positive type, clade 1.
    
 0.923
Trad_0378
Aminotransferase class I and II; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839:IPR015424:IPR015421; KEGG: rxy:Rxyl_0650 L-threonine O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; SPTR: Q1AYA8 L-threonine O-3-phosphate decarboxylase; PFAM: Aminotransferase class I and II.
  
 
 0.920
Trad_1465
COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: cya:CYA_0019 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR: Q2JY59 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropte ridinepyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi [...]
      0.833
Trad_0487
RNA-binding S4 domain protein; COGs: COG2501 conserved hypothetical protein; InterPro IPR002942; KEGG: cyb:CYB_1892 S4 domain-containing protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Q2JKE2 S4 domain protein; PFAM: S4 domain.
       0.794
Trad_0489
NmrA family protein; COGs: COG2910 Putative NADH-flavin reductase; InterPro IPR008030:IPR016040; KEGG: fal:FRAAL4004 putative nucleoside-diphosphate-sugar epimerases; PFAM: NmrA family protein; SPTR: C1XST4 Putative NADH-flavin reductase; PFAM: NmrA-like family.
       0.690
Trad_2211
Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR015424:IPR015421:IPR004839; KEGG: cag:Cagg_1395 aminotransferase class I and II; PFAM: aminotransferase class I and II; SPTR: B8G8P0 Aminotransferase class I and II; PFAM: Aminotransferase class I and II.
 
  
 0.626
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.