STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0819Protein of unknown function DUF503; COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: dra:DR_1478 hypothetical protein; PFAM: protein of unknown function DUF503; SPTR: Q9RUB3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF503). (103 aa)    
Predicted Functional Partners:
Trad_0820
Protein of unknown function DUF1999; InterPro IPR018987; KEGG: ttj:TTHA1254 hypothetical protein; PFAM: Protein of unknown function DUF1999; SPTR: Q72J89 Fe-S binding reductase, putative; PFAM: Protein of unknown function (DUF1999).
       0.837
Trad_0821
COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: ttj:TTHA1789 molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; SPTR: B7A992 Molybdenum cofactor biosynthesis protein C; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC.
       0.773
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.773
Trad_0823
InterPro IPR000326:IPR016118; KEGG: hau:Haur_4970 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: C1XUY7 PAP2 superfamily protein; PFAM: PAP2 superfamily.
       0.773
Trad_1338
Protein of unknown function DUF205; COGs: COG5322 dehydrogenase; InterPro IPR003811:IPR006151:IPR016040; KEGG: dge:Dgeo_1012 hypothetical protein; PFAM: protein of unknown function DUF205; Shikimate/quinate 5-dehydrogenase; SPTR: Q1IZM2 Membrane domain and Glutamyl-tRNAGlu reductase-like NAD(P) binding domain; PFAM: Domain of unknown function (DUF205); Shikimate / quinate 5-dehydrogenase; TIGRFAM: conserved hypothetical integral membrane protein TIGR00023; Belongs to the PlsY family.
  
     0.698
Trad_1177
Outer membrane efflux protein; InterPro IPR003423; KEGG: ttj:TTHA0731 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: C1XKE3 Outer membrane protein; PFAM: Outer membrane efflux protein.
  
     0.697
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
 
  
 0.693
Trad_0818
Protein of unknown function DUF322; COGs: COG1302 conserved hypothetical protein; InterPro IPR005531; KEGG: dge:Dgeo_1721 hypothetical protein; PFAM: protein of unknown function DUF322; SPTR: B7AC20 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF322).
 
     0.643
Trad_0644
NUDIX hydrolase; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR020084:IPR000086:IPR015797:IPR020476; KEGG: dge:Dgeo_0608 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: Q1J0S4 NUDIX hydrolase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family.
  
     0.615
Trad_0817
DAK2 domain fusion protein YloV; COGs: COG1461 kinase related to dihydroxyacetone kinase; InterPro IPR019986:IPR004007; KEGG: ddr:Deide_17580 putative Dak phosphatase; PFAM: Dak phosphatase; SPTR: C1XV24 Predicted kinase, dihydroxyacetone kinase; TIGRFAM: DAK2 domain fusion protein YloV; PFAM: DAK2 domain; TIGRFAM: DAK2 domain fusion protein YloV.
 
     0.591
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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